/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs/EXTERNAL-K012119_1895061_2
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SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs LANE EXTERNAL-K012119_1895061_2
Mapping Stats (Reads)
| Concept | Total Reads | % |
Pair One Reads | % | Pair Two Reads | % |
| Sequenced Reads | 44870262 | 100.00 % | 22435131 | 100.00 % | 22435131 | 100.00 % |
| General Reads | 33879827 | 75.51 % | 17041079 | 75.96 % | 16838748 | 75.06 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 6 | 0.00 % | 3 | 0.00 % | 3 | 0.00 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 10990429 | 24.49 % | 5394049 | 24.04 % | 5596380 | 24.94 % |
| Bisulfite_reads C2T | 17503773 | 39.01 % | 8802292 | 39.23 % | 8701481 | 38.79 % |
| Bisulfite_reads G2A | 16376060 | 36.50 % | 8238790 | 36.72 % | 8137270 | 36.27 % |
Uniqueness (Fragments)
| Concept | Value |
| Unique Fragments | 13138584 |
| Average Unique | 58.56 % |
Mapping Stats (Bases)
| Concept | Total Bases | % |
Pair One Bases | % | Pair Two Bases | % |
| Base Counts Overall A | 1145664531 | 33.16 % | 474596172 | 27.47 % | 671068359 | 38.85 % |
| Base Counts Overall C | 555186296 | 16.07 % | 149253055 | 8.64 % | 405933241 | 23.50 % |
| Base Counts Overall G | 566380288 | 16.39 % | 412301871 | 23.87 % | 154078417 | 8.92 % |
| Base Counts Overall T | 1142294483 | 33.06 % | 668622072 | 38.70 % | 473672411 | 27.42 % |
| Base Counts Overall N | 45484576 | 1.32 % | 22731917 | 1.32 % | 22752659 | 1.32 % |
Bisulfite Conversion Rate
| Bisulfite Conversion Type | Conversion Rate |
| Conversion Rate | NA |
| Over Conversion Rate | NA |
Correct Pairs
| Concept | Total Reads |
| Correct Pairs | 16175153 |
Mapping Quality
| Mapping Quality Histogram |
 |
Read Length
| Read Length | Reads |
| 76 | 22435131 |
| 76 | 22435131 |
Insert Size Plot
| Insert Size Histogram |
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