/EXTERNAL BLUEPRINT/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs

BACK

SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	343873610	100.00 %	171936805	100.00 %	171936805	100.00 %
General Reads	222798931	64.79 %	112077226	65.19 %	110721705	64.40 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	59	0.00 %	31	0.00 %	28	0.00 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	121074620	35.21 %	59859548	34.81 %	61215072	35.60 %
Bisulfite_reads C2T	115050582	33.46 %	57864342	33.65 %	57186240	33.26 %
Bisulfite_reads G2A	107748408	31.33 %	54212915	31.53 %	53535493	31.14 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	86772554
Average Unique	50.47 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	8143220018	30.75 %	3648575698	27.56 %	4494644320	33.95 %
Base Counts Overall C	4872743598	18.40 %	1842529635	13.92 %	3030213963	22.89 %
Base Counts Overall G	4982140689	18.82 %	3082366542	23.28 %	1899774147	14.35 %
Base Counts Overall T	8131535049	30.71 %	4491440035	33.93 %	3640095014	27.49 %
Base Counts Overall N	348628616	1.32 %	174222075	1.32 %	174406541	1.32 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	NA
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	106642062

Mapping Quality

Mapping Quality Histogram

Insert Size Plot

Insert Size Histogram

Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012080_1895022_2
EXTERNAL-K012119_1895061_2
EXTERNAL-K012083_1895025_2
EXTERNAL-K012086_1895028_2
EXTERNAL-K012081_1895023_2
EXTERNAL-K012082_1895024_2
EXTERNAL-K012084_1895026_2
EXTERNAL-K012118_1895060_2
EXTERNAL-K012039_1894981_2
EXTERNAL-K012087_1895029_2
EXTERNAL-K012085_1895027_2