/EXTERNAL BLUEPRINT/mapping_coverage/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs
BACK
SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
172404209 |
100% |
12260641385 |
100% |
| Mapped |
169617548 |
98.38 % |
12048855149 |
98.27 % |
| Passed |
75704024 |
43.91 % |
4911427325 |
40.06 % |
| NotPassed |
93913524 |
54.47 % |
7137427824 |
58.21 % |
| |
|
|
|
|
| LowMAPQ |
41045882 |
23.81 % |
3119487032 |
25.44 % |
| MateUnmapped |
2786661 |
1.62 % |
211786236 |
1.73 % |
| Duplicate |
50432564 |
29.25 % |
3832874864 |
31.26 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
264834 |
0.15 % |
20127384 |
0.16 % |
| |
|
|
|
|
| NotCorrectlyAligned |
2170240 |
1.26 % |
164938240 |
1.35 % |
| Unmapped |
2786661 |
1.62 % |
211786236 |
1.73 % |
Base Level Counts
| Bases |
# |
% |
| Total |
5300849444 |
100% |
| Passed |
4467312283 |
84.28 % |
| Trimmed |
319596767 |
6.03 % |
| Clipped |
16544616 |
0.31 % |
| Overlapping |
372877503 |
7.03 % |
| LowQuality |
124518275 |
2.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |