/EXTERNAL BLUEPRINT/methylation/K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs
BACK
SAMPLE K012039_K012080_K012081_K012082_K012083_K012084_K012085_K012086_K012087_K012118_K012119_11_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
19746495 |
113214 |
0.57 % |
| NonRefCpG |
808472 |
234 |
0.03 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
3483090 |
12.79 % |
7047 |
2.40 % |
275340 |
26.85 % |
132 |
8.16 % |
| Intermediate (0.3-0.7) |
9409047 |
34.56 % |
52876 |
17.99 % |
378479 |
36.90 % |
391 |
24.15 % |
| Methylated (0.7-1) |
14333496 |
52.65 % |
233951 |
79.61 % |
371771 |
36.25 % |
1097 |
67.69 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.720 |
|
0.870 |
|
0.560 |
|
0.820 |
|