/EXTERNAL BLUEPRINT/K012137_1_lane_gembs

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SAMPLE K012137_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 125036722 100.00 % 62518361 100.00 % 62518361 100.00 %
General Reads 119837070 95.84 % 60189434 96.27 % 59647636 95.41 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5199652 4.16 % 2328927 3.73 % 2870725 4.59 %
Bisulfite_reads C2T 62015529 49.60 % 31140998 49.81 % 30874531 49.38 %
Bisulfite_reads G2A 57821541 46.24 % 29048436 46.46 % 28773105 46.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 45429174
Average Unique 72.67 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3433274065 35.66 % 1320816394 27.44 % 2112457671 43.88 %
Base Counts Overall C 1336064282 13.88 % 141905739 2.95 % 1194158543 24.81 %
Base Counts Overall G 1376739840 14.30 % 1202066778 24.97 % 174673062 3.63 %
Base Counts Overall T 3354749171 34.84 % 2085376563 43.32 % 1269372608 26.37 %
Base Counts Overall N 127000236 1.32 % 63748323 1.32 % 63251913 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 55728771



Mapping Quality

Mapping Quality Histogram
K012137_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012137_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012137_1895079_2