/EXTERNAL BLUEPRINT/mapping_coverage/K012137_1_lane_gembs
BACK
SAMPLE K012137_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
100090403 |
100% |
6967404501 |
100% |
| Mapped |
98992925 |
98.90 % |
6883996173 |
98.80 % |
| Passed |
53393739 |
53.35 % |
3418458037 |
49.06 % |
| NotPassed |
45599186 |
45.56 % |
3465538136 |
49.74 % |
| |
|
|
|
|
| LowMAPQ |
24758716 |
24.74 % |
1881662416 |
27.01 % |
| MateUnmapped |
1097478 |
1.10 % |
83408328 |
1.20 % |
| Duplicate |
19793110 |
19.78 % |
1504276360 |
21.59 % |
| BadOrientation |
4 |
0.00 % |
304 |
0.00 % |
| LargeInsertSize |
3626 |
0.00 % |
275576 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
1043730 |
1.04 % |
79323480 |
1.14 % |
| Unmapped |
1097478 |
1.10 % |
83408328 |
1.20 % |
Base Level Counts
| Bases |
# |
% |
| Total |
3840653920 |
100% |
| Passed |
3108305100 |
80.93 % |
| Trimmed |
223740223 |
5.83 % |
| Clipped |
10256675 |
0.27 % |
| Overlapping |
411939208 |
10.73 % |
| LowQuality |
86412714 |
2.25 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |