/EXTERNAL BLUEPRINT/methylation/K012137_1_lane_gembs

BACK

SAMPLE K012137_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 17854195 55216 0.31 %
NonRefCpG 838638 150 0.02 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012137_1_lane_gembs_coverage_refCpG.png ./IMG//K012137_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012137_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012137_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012137_1_lane_gembs_quality_refcpg.png ./IMG//K012137_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012137_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3933388 16.92 % 5855 3.98 % 270480 27.26 % 84 9.99 %
Intermediate (0.3-0.7) 8149157 35.05 % 27297 18.53 % 369344 37.23 % 196 23.07 %
Methylated (0.7-1) 11165893 48.03 % 114139 77.49 % 352330 35.51 % 568 66.94 %
Median Methylation 0.680 0.860 0.550 0.820