/EXTERNAL BLUEPRINT/K012133_1_lane_gembs

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SAMPLE K012133_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 80052522 100.00 % 40026261 100.00 % 40026261 100.00 %
General Reads 74853107 93.50 % 37594865 93.93 % 37258242 93.08 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 5199415 6.50 % 2431396 6.07 % 2768019 6.92 %
Bisulfite_reads C2T 38685179 48.32 % 19425238 48.53 % 19259941 48.12 %
Bisulfite_reads G2A 36167928 45.18 % 18169627 45.39 % 17998301 44.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 27788654
Average Unique 69.43 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 2133246798 34.61 % 816010851 26.48 % 1317235947 42.74 %
Base Counts Overall C 919361661 14.91 % 122374884 3.97 % 796986777 25.86 %
Base Counts Overall G 945146580 15.33 % 798008806 25.89 % 147137774 4.77 %
Base Counts Overall T 2085652787 33.84 % 1305407663 42.36 % 780245124 25.32 %
Base Counts Overall N 80636368 1.31 % 40219893 1.30 % 40416475 1.31 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate NA
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 34367786



Mapping Quality

Mapping Quality Histogram
K012133_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K012133_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K012133_1895075_2