/EXTERNAL BLUEPRINT/mapping_coverage/K012133_1_lane_gembs
BACK
SAMPLE K012133_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
60736099 |
100% |
4257864038 |
100% |
| Mapped |
60025350 |
98.83 % |
4203847114 |
98.73 % |
| Passed |
28639569 |
47.15 % |
1818527758 |
42.71 % |
| NotPassed |
31385781 |
51.68 % |
2385319356 |
56.02 % |
| |
|
|
|
|
| LowMAPQ |
16589700 |
27.31 % |
1260817200 |
29.61 % |
| MateUnmapped |
710749 |
1.17 % |
54016924 |
1.27 % |
| Duplicate |
14162233 |
23.32 % |
1076329708 |
25.28 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
1012 |
0.00 % |
76912 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
632836 |
1.04 % |
48095536 |
1.13 % |
| Unmapped |
710749 |
1.17 % |
54016924 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
2082225884 |
100% |
| Passed |
1643301041 |
78.92 % |
| Trimmed |
119139266 |
5.72 % |
| Clipped |
5404284 |
0.26 % |
| Overlapping |
258293842 |
12.40 % |
| LowQuality |
56087451 |
2.69 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |