/EXTERNAL BLUEPRINT/methylation/K012133_1_lane_gembs

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SAMPLE K012133_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 13148359 10503 0.08 %
NonRefCpG 717783 40 0.01 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012133_1_lane_gembs_coverage_refCpG.png ./IMG//K012133_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012133_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012133_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012133_1_lane_gembs_quality_refcpg.png ./IMG//K012133_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012133_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2737963 17.39 % 1123 4.19 % 188747 23.85 % 16 8.75 %
Intermediate (0.3-0.7) 5651746 35.89 % 4990 18.64 % 298545 37.72 % 41 22.13 %
Methylated (0.7-1) 7357895 46.72 % 20665 77.17 % 304134 38.43 % 129 69.12 %
Median Methylation 0.670 0.860 0.590 0.830