/EXTERNAL BLUEPRINT/methylation/K012134_1_lane_gembs

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SAMPLE K012134_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 13930326 6392 0.05 %
NonRefCpG 783009 18 0.00 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K012134_1_lane_gembs_coverage_refCpG.png ./IMG//K012134_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K012134_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K012134_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K012134_1_lane_gembs_quality_refcpg.png ./IMG//K012134_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K012134_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 2958807 17.61 % 622 3.63 % 221484 25.36 % 7 7.05 %
Intermediate (0.3-0.7) 6124795 36.46 % 3283 19.16 % 330205 37.80 % 23 23.53 %
Methylated (0.7-1) 7715148 45.93 % 13230 77.21 % 321778 36.84 % 69 69.42 %
Median Methylation 0.660 0.860 0.570 0.820