/EXTERNAL CREST/mapping_coverage/K006454_1_lane_gembs
BACK
SAMPLE K006454_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1658684656 |
100% |
116935995003 |
100% |
| Mapped |
1658684656 |
100.00 % |
116935995003 |
100.00 % |
| Passed |
937719686 |
56.53 % |
94471118303 |
80.79 % |
| NotPassed |
720964970 |
43.47 % |
22464876700 |
19.21 % |
| |
|
|
|
|
| LowMAPQ |
224648767 |
13.54 % |
22464876700 |
19.21 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
496316203 |
29.92 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
47026513000 |
100% |
| Passed |
42704774708 |
90.81 % |
| Trimmed |
2118980147 |
4.51 % |
| Clipped |
1646189503 |
3.50 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
556568642 |
1.18 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |