/EXTERNAL CREST/methylation/K006454_1_lane_gembs

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SAMPLE K006454_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25667235 16235754 63.25 %
NonRefCpG 382161 114041 29.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006454_1_lane_gembs_coverage_refCpG.png ./IMG//K006454_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006454_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006454_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006454_1_lane_gembs_quality_refcpg.png ./IMG//K006454_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006454_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6914641 13.93 % 4419790 12.10 % 205590 29.53 % 39047 12.24 %
Intermediate (0.3-0.7) 10674428 21.50 % 6608636 18.10 % 174100 25.01 % 67576 21.18 %
Methylated (0.7-1) 32064144 64.58 % 25487345 69.80 % 316505 45.46 % 212378 66.58 %
Median Methylation 0.800 0.830 0.640 0.820