/EXTERNAL CREST/mapping_coverage/K006460_1_lane_gembs
BACK
SAMPLE K006460_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2005142245 |
100% |
142910518430 |
100% |
| Mapped |
2005142245 |
100.00 % |
142910518430 |
100.00 % |
| Passed |
1093871829 |
54.55 % |
111167136230 |
77.79 % |
| NotPassed |
911270416 |
45.45 % |
31743382200 |
22.21 % |
| |
|
|
|
|
| LowMAPQ |
317433822 |
15.83 % |
31743382200 |
22.21 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
593836594 |
29.62 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
54889436900 |
100% |
| Passed |
49503128733 |
90.19 % |
| Trimmed |
2406488457 |
4.38 % |
| Clipped |
2497002218 |
4.55 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
482817492 |
0.88 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |