/EXTERNAL CREST/methylation/K006460_1_lane_gembs

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SAMPLE K006460_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25150509 16465667 65.47 %
NonRefCpG 325124 107438 33.05 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006460_1_lane_gembs_coverage_refCpG.png ./IMG//K006460_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006460_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006460_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006460_1_lane_gembs_quality_refcpg.png ./IMG//K006460_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006460_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7101594 14.52 % 5249405 14.15 % 146616 24.90 % 31008 10.67 %
Intermediate (0.3-0.7) 10023360 20.50 % 6439338 17.35 % 143945 24.45 % 57880 19.91 %
Methylated (0.7-1) 31770987 64.98 % 25421412 68.50 % 298286 50.66 % 201803 69.42 %
Median Methylation 0.810 0.830 0.700 0.830