/EXTERNAL CREST/mapping_coverage/K006461_1_lane_gembs
BACK
SAMPLE K006461_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1790559973 |
100% |
124929343463 |
100% |
| Mapped |
1790559973 |
100.00 % |
124929343463 |
100.00 % |
| Passed |
1025759347 |
57.29 % |
94414386263 |
75.57 % |
| NotPassed |
764800626 |
42.71 % |
30514957200 |
24.43 % |
| |
|
|
|
|
| LowMAPQ |
305149572 |
17.04 % |
30514957200 |
24.43 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
459651054 |
25.67 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
51452509600 |
100% |
| Passed |
46250900436 |
89.89 % |
| Trimmed |
2244014302 |
4.36 % |
| Clipped |
2509659988 |
4.88 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
447934874 |
0.87 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |