/EXTERNAL CREST/methylation/K006461_1_lane_gembs

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SAMPLE K006461_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 24616640 15181466 61.67 %
NonRefCpG 327075 97651 29.86 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006461_1_lane_gembs_coverage_refCpG.png ./IMG//K006461_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006461_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006461_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006461_1_lane_gembs_quality_refcpg.png ./IMG//K006461_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006461_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6983516 14.61 % 4963377 14.17 % 151020 25.61 % 29015 10.68 %
Intermediate (0.3-0.7) 10074333 21.08 % 6187251 17.67 % 147241 24.97 % 54324 19.99 %
Methylated (0.7-1) 30734909 64.31 % 23868013 68.16 % 291453 49.42 % 188362 69.33 %
Median Methylation 0.800 0.830 0.690 0.830