/EXTERNAL CREST/mapping_coverage/K006459_1_lane_gembs
BACK
SAMPLE K006459_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1792796206 |
100% |
127689664296 |
100% |
| Mapped |
1792796206 |
100.00 % |
127689664296 |
100.00 % |
| Passed |
982811546 |
54.82 % |
100386667496 |
78.62 % |
| NotPassed |
809984660 |
45.18 % |
27302996800 |
21.38 % |
| |
|
|
|
|
| LowMAPQ |
273029968 |
15.23 % |
27302996800 |
21.38 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
536954692 |
29.95 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
49303196700 |
100% |
| Passed |
44599174637 |
90.46 % |
| Trimmed |
2185415032 |
4.43 % |
| Clipped |
2028949605 |
4.12 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
489657426 |
0.99 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |