/EXTERNAL CREST/methylation/K006459_1_lane_gembs

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SAMPLE K006459_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25131569 15782297 62.80 %
NonRefCpG 343373 101132 29.45 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006459_1_lane_gembs_coverage_refCpG.png ./IMG//K006459_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006459_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006459_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006459_1_lane_gembs_quality_refcpg.png ./IMG//K006459_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006459_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7536032 15.45 % 5330197 14.79 % 165970 26.92 % 33523 11.91 %
Intermediate (0.3-0.7) 11306161 23.17 % 7129227 19.78 % 162800 26.41 % 62303 22.13 %
Methylated (0.7-1) 29945245 61.38 % 23587440 65.44 % 287651 46.66 % 185716 65.96 %
Median Methylation 0.780 0.810 0.660 0.810