/EXTERNAL CREST/mapping_coverage/K006453_1_lane_gembs
BACK
SAMPLE K006453_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2080798910 |
100% |
149196165059 |
100% |
| Mapped |
2080798910 |
100.00 % |
149196165059 |
100.00 % |
| Passed |
1123201654 |
53.98 % |
118716596159 |
79.57 % |
| NotPassed |
957597256 |
46.02 % |
30479568900 |
20.43 % |
| |
|
|
|
|
| LowMAPQ |
304795689 |
14.65 % |
30479568900 |
20.43 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
652801567 |
31.37 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
56352560700 |
100% |
| Passed |
50933323538 |
90.38 % |
| Trimmed |
2506414026 |
4.45 % |
| Clipped |
2206932058 |
3.92 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
705891078 |
1.25 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |