/EXTERNAL CREST/methylation/K006453_1_lane_gembs

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SAMPLE K006453_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25674301 17532043 68.29 %
NonRefCpG 343149 119070 34.70 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006453_1_lane_gembs_coverage_refCpG.png ./IMG//K006453_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006453_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006453_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006453_1_lane_gembs_quality_refcpg.png ./IMG//K006453_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006453_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7511944 15.01 % 5566855 14.27 % 162427 26.08 % 39394 12.24 %
Intermediate (0.3-0.7) 11442464 22.86 % 7827894 20.07 % 161246 25.89 % 73151 22.73 %
Methylated (0.7-1) 31096955 62.13 % 25612352 65.66 % 299144 48.03 % 209247 65.03 %
Median Methylation 0.790 0.810 0.670 0.800