/EXTERNAL CREST/mapping_coverage/K006457_1_lane_gembs
BACK
SAMPLE K006457_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2525486536 |
100% |
184081000466 |
100% |
| Mapped |
2525486536 |
100.00 % |
184081000466 |
100.00 % |
| Passed |
1303420970 |
51.61 % |
148388027466 |
80.61 % |
| NotPassed |
1222065566 |
48.39 % |
35692973000 |
19.39 % |
| |
|
|
|
|
| LowMAPQ |
356929730 |
14.13 % |
35692973000 |
19.39 % |
| MateUnmapped |
0 |
0.00 % |
0 |
0.00 % |
| Duplicate |
865135836 |
34.26 % |
0 |
0.00 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
0 |
0.00 % |
0 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
0 |
0.00 % |
0 |
0.00 % |
| Unmapped |
0 |
0.00 % |
0 |
0.00 % |
Base Level Counts
| Bases |
# |
% |
| Total |
65422492700 |
100% |
| Passed |
59131019960 |
90.38 % |
| Trimmed |
2888733129 |
4.42 % |
| Clipped |
2709584415 |
4.14 % |
| Overlapping |
0 |
0.00 % |
| LowQuality |
693155196 |
1.06 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |