/EXTERNAL CREST/methylation/K006457_1_lane_gembs

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SAMPLE K006457_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 25862885 18544274 71.70 %
NonRefCpG 320948 130917 40.79 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006457_1_lane_gembs_coverage_refCpG.png ./IMG//K006457_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006457_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006457_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006457_1_lane_gembs_quality_refcpg.png ./IMG//K006457_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006457_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7483587 14.81 % 5761307 14.20 % 138196 23.41 % 36851 10.92 %
Intermediate (0.3-0.7) 10469701 20.71 % 7394540 18.23 % 140277 23.76 % 69113 20.47 %
Methylated (0.7-1) 32593489 64.48 % 27407275 67.57 % 311916 52.83 % 231591 68.61 %
Median Methylation 0.800 0.820 0.720 0.820