/cemt/A56419_3_lane_gembs

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SAMPLE A56419_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1246396724 100.00 % 623198362 100.00 % 623198362 100.00 %
General Reads 1091108900 87.54 % 550744842 88.37 % 540364058 86.71 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 136772925 10.97 % 68860781 11.05 % 67912144 10.90 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 18514899 1.49 % 3592739 0.58 % 14922160 2.39 %
Bisulfite_reads C2T 621594387 49.87 % 313577032 50.32 % 308017355 49.43 %
Bisulfite_reads G2A 606287438 48.64 % 306028591 49.11 % 300258847 48.18 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 538730993
Average Unique 86.45 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73687644438 39.15 % 32390386256 34.42 % 41297258182 43.89 %
Base Counts Overall C 19495749773 10.36 % 557753962 0.59 % 18937995811 20.12 %
Base Counts Overall G 19810687481 10.53 % 18751170518 19.93 % 1059516963 1.13 %
Base Counts Overall T 73948197120 39.29 % 41774465170 44.39 % 32173731950 34.19 %
Base Counts Overall N 1263626512 0.67 % 629176756 0.67 % 634449756 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9853548689009286
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 591456597



Mapping Quality

Mapping Quality Histogram
A56419_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A56419_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGJ2KCCXY_5_1
HKNHLALXX_2_1
H37HNALXX_2_1