/cemt/mapping_coverage/A56419_3_lane_gembs
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SAMPLE A56419_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1018711026 |
100% |
132495299934 |
100% |
| Mapped |
1005331019 |
98.69 % |
130488298884 |
98.49 % |
| Passed |
802099631 |
78.74 % |
100003590684 |
75.48 % |
| NotPassed |
203231388 |
19.95 % |
30484708200 |
23.01 % |
| |
|
|
|
|
| LowMAPQ |
114770788 |
11.27 % |
17215618200 |
12.99 % |
| MateUnmapped |
13380007 |
1.31 % |
2007001050 |
1.51 % |
| Duplicate |
72510325 |
7.12 % |
10876548750 |
8.21 % |
| BadOrientation |
84 |
0.00 % |
12600 |
0.00 % |
| LargeInsertSize |
12004 |
0.00 % |
1800600 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
15938187 |
1.56 % |
2390728050 |
1.80 % |
| Unmapped |
13380007 |
1.31 % |
2007001050 |
1.51 % |
Base Level Counts
| Bases |
# |
% |
| Total |
120304055550 |
100% |
| Passed |
92265447751 |
76.69 % |
| Trimmed |
3356475831 |
2.79 % |
| Clipped |
323464490 |
0.27 % |
| Overlapping |
19977000376 |
16.61 % |
| LowQuality |
4381667102 |
3.64 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |