/cemt/methylation/A56419_3_lane_gembs

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SAMPLE A56419_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26737239 14679271 54.90 %
NonRefCpG 346974 130821 37.70 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A56419_3_lane_gembs_coverage_refCpG.png ./IMG//A56419_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A56419_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A56419_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A56419_3_lane_gembs_quality_refcpg.png ./IMG//A56419_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A56419_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 10449630 21.36 % 5184109 15.71 % 208198 32.99 % 76630 21.84 %
Intermediate (0.3-0.7) 13052229 26.68 % 7278542 22.05 % 173734 27.53 % 87430 24.92 %
Methylated (0.7-1) 25412215 51.95 % 20539875 62.24 % 249215 39.49 % 186799 53.24 %
Median Methylation 0.720 0.810 0.550 0.730