/cemt/A77947_1_lane_gembs

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SAMPLE A77947_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1223906010 100.00 % 611953005 100.00 % 611953005 100.00 %
General Reads 1101009839 89.96 % 555626366 90.80 % 545383473 89.12 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9080839 0.74 % 4574390 0.75 % 4506449 0.74 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 113815332 9.30 % 51752249 8.46 % 62063083 10.14 %
Bisulfite_reads C2T 566120807 46.26 % 285609754 46.67 % 280511053 45.84 %
Bisulfite_reads G2A 543969871 44.45 % 274591002 44.87 % 269378869 44.02 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 487662504
Average Unique 79.69 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 70294026574 38.04 % 28404699253 30.74 % 41889327321 45.33 %
Base Counts Overall C 21321636821 11.54 % 2374202300 2.57 % 18947434521 20.50 %
Base Counts Overall G 20799328276 11.25 % 18260946733 19.76 % 2538381543 2.75 %
Base Counts Overall T 71149596126 38.50 % 42742302489 46.26 % 28407293637 30.74 %
Base Counts Overall N 1245219713 0.67 % 622752980 0.67 % 622466733 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9932062013399934
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 538919595



Mapping Quality

Mapping Quality Histogram
A77947_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77947_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
H5235CCXY_1_1
HGJ2KCCXY_7_1