/CEMT/A77948_3_lane_gembs

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SAMPLE A77948_3_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2696995600 100.00 % 1348497800 100.00 % 1348497800 100.00 %
General Reads 1893771658 70.22 % 950301165 70.47 % 943470493 69.96 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2374668 0.09 % 1191097 0.09 % 1183571 0.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 800849274 29.69 % 397005538 29.44 % 403843736 29.95 %
Bisulfite_reads C2T 968542345 35.91 % 485901220 36.03 % 482641125 35.79 %
Bisulfite_reads G2A 927603981 34.39 % 465591042 34.53 % 462012939 34.26 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 805423945
Average Unique 59.73 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 141898917161 34.84 % 59038009029 28.99 % 82860908132 40.69 %
Base Counts Overall C 59832006309 14.69 % 14598916757 7.17 % 45233089552 22.21 %
Base Counts Overall G 59986030858 14.73 % 44529332006 21.87 % 15456698852 7.59 %
Base Counts Overall T 142792479088 35.06 % 84086850903 41.30 % 58705628185 28.83 %
Base Counts Overall N 2736902184 0.67 % 1370059105 0.67 % 1366843079 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9109573933680775
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 903683773



Mapping Quality

Mapping Quality Histogram
A77948_3_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
A77948_3_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
HGJ2KCCXY_4_2
HGNYFCCXY_1_2
H5235CCXY_2_2