/CEMT/methylation/A77948_3_lane_gembs

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SAMPLE A77948_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27337091 25838400 94.52 %
NonRefCpG 288590 234878 81.39 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A77948_3_lane_gembs_coverage_refCpG.png ./IMG//A77948_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A77948_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A77948_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A77948_3_lane_gembs_quality_refcpg.png ./IMG//A77948_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A77948_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 7000419 12.92 % 6568641 12.57 % 51071 9.24 % 31314 6.50 %
Intermediate (0.3-0.7) 11126311 20.53 % 10425611 19.96 % 127604 23.09 % 103291 21.45 %
Methylated (0.7-1) 36069248 66.55 % 35249378 67.47 % 373920 67.67 % 346935 72.05 %
Median Methylation 0.820 0.830 0.820 0.840