/cemt/mapping_coverage/A77953_1_lane_gembs
BACK
SAMPLE A77953_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
929397661 |
100% |
121584486915 |
100% |
| Mapped |
917691070 |
98.74 % |
119828498265 |
98.56 % |
| Passed |
742692377 |
79.91 % |
93578694315 |
76.97 % |
| NotPassed |
174998693 |
18.83 % |
26249803950 |
21.59 % |
| |
|
|
|
|
| LowMAPQ |
94043412 |
10.12 % |
14106511800 |
11.60 % |
| MateUnmapped |
11706591 |
1.26 % |
1755988650 |
1.44 % |
| Duplicate |
68876277 |
7.41 % |
10331441550 |
8.50 % |
| BadOrientation |
60 |
0.00 % |
9000 |
0.00 % |
| LargeInsertSize |
6088 |
0.00 % |
913200 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12072856 |
1.30 % |
1810928400 |
1.49 % |
| Unmapped |
11706591 |
1.26 % |
1755988650 |
1.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
111395046450 |
100% |
| Passed |
86988623480 |
78.09 % |
| Trimmed |
3175113182 |
2.85 % |
| Clipped |
305963922 |
0.27 % |
| Overlapping |
17510388213 |
15.72 % |
| LowQuality |
3414957653 |
3.07 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |