/cemt/mapping_coverage/A70095_3_lane_gembs
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SAMPLE A70095_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
974232019 |
100% |
127842767586 |
100% |
| Mapped |
968245720 |
99.39 % |
126944822736 |
99.30 % |
| Passed |
775689280 |
79.62 % |
98061356736 |
76.70 % |
| NotPassed |
192556440 |
19.76 % |
28883466000 |
22.59 % |
| |
|
|
|
|
| LowMAPQ |
106383636 |
10.92 % |
15957545400 |
12.48 % |
| MateUnmapped |
5986299 |
0.61 % |
897944850 |
0.70 % |
| Duplicate |
74020648 |
7.60 % |
11103097200 |
8.68 % |
| BadOrientation |
84 |
0.00 % |
12600 |
0.00 % |
| LargeInsertSize |
7552 |
0.00 % |
1132800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12144520 |
1.25 % |
1821678000 |
1.42 % |
| Unmapped |
5986299 |
0.61 % |
897944850 |
0.70 % |
Base Level Counts
| Bases |
# |
% |
| Total |
116343432900 |
100% |
| Passed |
91172691200 |
78.37 % |
| Trimmed |
3314022828 |
2.85 % |
| Clipped |
252907275 |
0.22 % |
| Overlapping |
18029168889 |
15.50 % |
| LowQuality |
3574642708 |
3.07 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |