/cemt/methylation/A70095_3_lane_gembs

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SAMPLE A70095_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27211017 25560886 93.94 %
NonRefCpG 260977 209676 80.34 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A70095_3_lane_gembs_coverage_refCpG.png ./IMG//A70095_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A70095_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A70095_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A70095_3_lane_gembs_quality_refcpg.png ./IMG//A70095_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A70095_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 3406878 6.31 % 3005299 5.80 % 29906 6.00 % 13269 3.08 %
Intermediate (0.3-0.7) 9415860 17.45 % 8694085 16.77 % 89878 18.03 % 67540 15.66 %
Methylated (0.7-1) 41132169 76.23 % 40143009 77.43 % 378702 75.97 % 350560 81.27 %
Median Methylation 0.860 0.860 0.860 0.870