/cemt/mapping_coverage/A75617_1_lane_gembs
BACK
SAMPLE A75617_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1005564686 |
100% |
132255965388 |
100% |
| Mapped |
998424772 |
99.29 % |
131184978288 |
99.19 % |
| Passed |
761311758 |
75.71 % |
95618026188 |
72.30 % |
| NotPassed |
237113014 |
23.58 % |
35566952100 |
26.89 % |
| |
|
|
|
|
| LowMAPQ |
108173728 |
10.76 % |
16226059200 |
12.27 % |
| MateUnmapped |
7139914 |
0.71 % |
1070987100 |
0.81 % |
| Duplicate |
116411906 |
11.58 % |
17461785900 |
13.20 % |
| BadOrientation |
50 |
0.00 % |
7500 |
0.00 % |
| LargeInsertSize |
9000 |
0.00 % |
1350000 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12518330 |
1.24 % |
1877749500 |
1.42 % |
| Unmapped |
7139914 |
0.71 % |
1070987100 |
0.81 % |
Base Level Counts
| Bases |
# |
% |
| Total |
114186361950 |
100% |
| Passed |
89193939157 |
78.11 % |
| Trimmed |
3240773395 |
2.84 % |
| Clipped |
304436162 |
0.27 % |
| Overlapping |
18263899600 |
15.99 % |
| LowQuality |
3183313636 |
2.79 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |