/cemt/methylation/A75617_1_lane_gembs

BACK

SAMPLE A75617_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27110754 23082286 85.14 %
NonRefCpG 264945 198097 74.77 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A75617_1_lane_gembs_coverage_refCpG.png ./IMG//A75617_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A75617_1_lane_gembs_coverage_nonRefCpG.png ./IMG//A75617_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A75617_1_lane_gembs_quality_refcpg.png ./IMG//A75617_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A75617_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5702169 10.64 % 3682469 7.59 % 42967 8.52 % 18327 4.38 %
Intermediate (0.3-0.7) 10119027 18.87 % 8560247 17.63 % 102318 20.30 % 73247 17.52 %
Methylated (0.7-1) 37789710 70.49 % 36300035 74.78 % 358786 71.18 % 326568 78.10 %
Median Methylation 0.840 0.860 0.840 0.860