/CEMT/mapping_coverage/A56418_3_lane_gembs
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SAMPLE A56418_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
958066024 |
100% |
124987053706 |
100% |
| Mapped |
948194748 |
98.97 % |
123506362306 |
98.82 % |
| Passed |
755446722 |
78.85 % |
94594158406 |
75.68 % |
| NotPassed |
192748026 |
20.12 % |
28912203900 |
23.13 % |
| |
|
|
|
|
| LowMAPQ |
104623928 |
10.92 % |
15693589200 |
12.56 % |
| MateUnmapped |
9871276 |
1.03 % |
1480691400 |
1.18 % |
| Duplicate |
74251131 |
7.75 % |
11137669650 |
8.91 % |
| BadOrientation |
120 |
0.00 % |
18000 |
0.00 % |
| LargeInsertSize |
8502 |
0.00 % |
1275300 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13864345 |
1.45 % |
2079651750 |
1.66 % |
| Unmapped |
9871276 |
1.03 % |
1480691400 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
113305779150 |
100% |
| Passed |
87549030239 |
77.27 % |
| Trimmed |
3174884252 |
2.80 % |
| Clipped |
271769712 |
0.24 % |
| Overlapping |
18439851032 |
16.27 % |
| LowQuality |
3870243915 |
3.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |