/CEMT/methylation/A56418_3_lane_gembs

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SAMPLE A56418_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26797079 15240565 56.87 %
NonRefCpG 345793 134388 38.86 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A56418_3_lane_gembs_coverage_refCpG.png ./IMG//A56418_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A56418_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A56418_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A56418_3_lane_gembs_quality_refcpg.png ./IMG//A56418_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A56418_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8623537 17.62 % 3871616 11.59 % 186402 29.64 % 61093 17.32 %
Intermediate (0.3-0.7) 12389460 25.32 % 6786298 20.32 % 166759 26.52 % 81969 23.24 %
Methylated (0.7-1) 27925853 57.06 % 22736475 68.08 % 275687 43.84 % 209584 59.43 %
Median Methylation 0.770 0.840 0.610 0.790