/cemt/A56420_3_lane_gembs/H37HNALXX_3_1

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SAMPLE A56420_3_lane_gembs LANE H37HNALXX_3_1

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 684477614 100.00 % 342238807 100.00 % 342238807 100.00 %
General Reads 665986224 97.30 % 335868749 98.14 % 330117475 96.46 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9090925 1.33 % 4575210 1.34 % 4515715 1.32 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 9400465 1.37 % 1794848 0.52 % 7605617 2.22 %
Bisulfite_reads C2T 345484305 50.47 % 174169980 50.89 % 171314325 50.06 %
Bisulfite_reads G2A 329592844 48.15 % 166273979 48.58 % 163318865 47.72 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 294352625
Average Unique 86.01 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40157923063 38.85 % 17330004842 33.53 % 22827918221 44.17 %
Base Counts Overall C 10930790383 10.58 % 447723863 0.87 % 10483066520 20.29 %
Base Counts Overall G 11281222504 10.91 % 10373481929 20.07 % 907740575 1.76 %
Base Counts Overall T 40293215643 38.98 % 23181193751 44.86 % 17112021892 33.11 %
Base Counts Overall N 692968121 0.67 % 345655472 0.67 % 347312649 0.67 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9746661213491757
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 325869619



Mapping Quality

Mapping Quality Histogram
H37HNALXX_3_1.mapq.png



Read Length

Read Length Reads
150 342238807
150 342238807



Insert Size Plot

Insert Size Histogram
H37HNALXX_3_1.isize.png