/cemt/methylation/A56420_3_lane_gembs

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SAMPLE A56420_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27092897 16618484 61.34 %
NonRefCpG 324564 144860 44.63 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A56420_3_lane_gembs_coverage_refCpG.png ./IMG//A56420_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A56420_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A56420_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A56420_3_lane_gembs_quality_refcpg.png ./IMG//A56420_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A56420_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 9769301 19.02 % 4908931 13.26 % 169590 28.18 % 65263 17.81 %
Intermediate (0.3-0.7) 12620981 24.58 % 7541654 20.37 % 156155 25.95 % 83070 22.67 %
Methylated (0.7-1) 28965922 56.40 % 24564846 66.36 % 276102 45.88 % 218093 59.52 %
Median Methylation 0.760 0.830 0.640 0.790