/cemt/mapping_coverage/A63255_3_lane_gembs
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SAMPLE A63255_3_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
903132621 |
100% |
119352525596 |
100% |
| Mapped |
892636227 |
98.84 % |
117778066496 |
98.68 % |
| Passed |
703185368 |
77.86 % |
89360437646 |
74.87 % |
| NotPassed |
189450859 |
20.98 % |
28417628850 |
23.81 % |
| |
|
|
|
|
| LowMAPQ |
97455620 |
10.79 % |
14618343000 |
12.25 % |
| MateUnmapped |
10496394 |
1.16 % |
1574459100 |
1.32 % |
| Duplicate |
79433118 |
8.80 % |
11914967700 |
9.98 % |
| BadOrientation |
76 |
0.00 % |
11400 |
0.00 % |
| LargeInsertSize |
10292 |
0.00 % |
1543800 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
12551753 |
1.39 % |
1882762950 |
1.58 % |
| Unmapped |
10496394 |
1.16 % |
1574459100 |
1.32 % |
Base Level Counts
| Bases |
# |
% |
| Total |
105464747400 |
100% |
| Passed |
82515355965 |
78.24 % |
| Trimmed |
2986095368 |
2.83 % |
| Clipped |
254227551 |
0.24 % |
| Overlapping |
15850082203 |
15.03 % |
| LowQuality |
3858986313 |
3.66 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |