/cemt/methylation/A63255_3_lane_gembs

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SAMPLE A63255_3_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26456463 15001307 56.70 %
NonRefCpG 354239 134831 38.06 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//A63255_3_lane_gembs_coverage_refCpG.png ./IMG//A63255_3_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//A63255_3_lane_gembs_coverage_nonRefCpG.png ./IMG//A63255_3_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//A63255_3_lane_gembs_quality_refcpg.png ./IMG//A63255_3_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//A63255_3_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 8473246 17.91 % 4012905 12.36 % 193548 30.60 % 64623 18.40 %
Intermediate (0.3-0.7) 11854015 25.06 % 6541295 20.15 % 166262 26.28 % 81325 23.16 %
Methylated (0.7-1) 26976958 57.03 % 21906244 67.49 % 272750 43.12 % 205234 58.44 %
Median Methylation 0.770 0.840 0.600 0.780