/EXTERNAL KNIH/methylation/K006233_1_lane_gembs

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SAMPLE K006233_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26631422 21113137 79.28 %
NonRefCpG 391014 171429 43.84 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006233_1_lane_gembs_coverage_refCpG.png ./IMG//K006233_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006233_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006233_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006233_1_lane_gembs_quality_refcpg.png ./IMG//K006233_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006233_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6713516 13.08 % 5382350 12.01 % 164000 23.44 % 46244 10.77 %
Intermediate (0.3-0.7) 10907210 21.24 % 8314848 18.55 % 177275 25.33 % 94442 21.99 %
Methylated (0.7-1) 33721311 65.68 % 31127517 69.44 % 358531 51.23 % 288785 67.24 %
Median Methylation 0.820 0.840 0.710 0.820