/EXTERNAL KNIH/mapping_coverage/K006234_1_lane_gembs
BACK
SAMPLE K006234_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1368290964 |
100% |
186146724102 |
100% |
| Mapped |
1355771578 |
99.09 % |
184256296816 |
98.98 % |
| Passed |
641952288 |
46.92 % |
76469584026 |
41.08 % |
| NotPassed |
713819290 |
52.17 % |
107786712790 |
57.90 % |
| |
|
|
|
|
| LowMAPQ |
467268922 |
34.15 % |
70557607222 |
37.90 % |
| MateUnmapped |
12519386 |
0.91 % |
1890427286 |
1.02 % |
| Duplicate |
204784336 |
14.97 % |
30922434736 |
16.61 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
515768 |
0.04 % |
77880968 |
0.04 % |
| |
|
|
|
|
| NotCorrectlyAligned |
41250264 |
3.01 % |
6228789864 |
3.35 % |
| Unmapped |
12519386 |
0.91 % |
1890427286 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
96815353280 |
100% |
| Passed |
72306081120 |
74.68 % |
| Trimmed |
2692008188 |
2.78 % |
| Clipped |
1049506453 |
1.08 % |
| Overlapping |
19296262801 |
19.93 % |
| LowQuality |
1471494718 |
1.52 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |