/EXTERNAL KNIH/mapping_coverage/K006235_1_lane_gembs
BACK
SAMPLE K006235_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1478000578 |
100% |
201794772077 |
100% |
| Mapped |
1460961738 |
98.85 % |
199221907237 |
98.73 % |
| Passed |
650876854 |
44.04 % |
76899089753 |
38.11 % |
| NotPassed |
810084884 |
54.81 % |
122322817484 |
60.62 % |
| |
|
|
|
|
| LowMAPQ |
516656982 |
34.96 % |
78015204282 |
38.66 % |
| MateUnmapped |
17038840 |
1.15 % |
2572864840 |
1.27 % |
| Duplicate |
245973669 |
16.64 % |
37142024019 |
18.41 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
282376 |
0.02 % |
42638776 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
47171857 |
3.19 % |
7122950407 |
3.53 % |
| Unmapped |
17038840 |
1.15 % |
2572864840 |
1.27 % |
Base Level Counts
| Bases |
# |
% |
| Total |
98144438670 |
100% |
| Passed |
71920685615 |
73.28 % |
| Trimmed |
2670362171 |
2.72 % |
| Clipped |
1193158621 |
1.22 % |
| Overlapping |
20052190296 |
20.43 % |
| LowQuality |
2308041967 |
2.35 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |