/EXTERNAL KNIH/methylation/K006235_1_lane_gembs

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SAMPLE K006235_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26690912 21669559 81.19 %
NonRefCpG 381405 181841 47.68 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006235_1_lane_gembs_coverage_refCpG.png ./IMG//K006235_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006235_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006235_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006235_1_lane_gembs_quality_refcpg.png ./IMG//K006235_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006235_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6983513 13.49 % 5751702 12.54 % 146918 21.44 % 44837 10.15 %
Intermediate (0.3-0.7) 10673908 20.62 % 8427877 18.38 % 168475 24.59 % 94071 21.30 %
Methylated (0.7-1) 34110772 65.89 % 31679921 69.08 % 369845 53.97 % 302735 68.55 %
Median Methylation 0.810 0.830 0.730 0.820