/EXTERNAL KNIH/K006238_1_lane_gembs

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SAMPLE K006238_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1658949164 100.00 % 829474582 100.00 % 829474582 100.00 %
General Reads 1619231687 97.61 % 815323203 98.29 % 803908484 96.92 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11842861 0.71 % 5989910 0.72 % 5852951 0.71 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 27874616 1.68 % 8161469 0.98 % 19713147 2.38 %
Bisulfite_reads C2T 832033844 50.15 % 418921668 50.50 % 413112176 49.80 %
Bisulfite_reads G2A 799040704 48.17 % 402391445 48.51 % 396649259 47.82 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 544483742
Average Unique 65.64 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 90810806257 36.01 % 35276814279 27.98 % 55533991978 44.05 %
Base Counts Overall C 33981866311 13.48 % 4449282134 3.53 % 29532584177 23.42 %
Base Counts Overall G 36060123238 14.30 % 30194857255 23.95 % 5865265983 4.65 %
Base Counts Overall T 89485206293 35.49 % 55268229397 43.84 % 34216976896 27.14 %
Base Counts Overall N 1822270829 0.72 % 890953399 0.71 % 931317430 0.74 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9699627720592718
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 626231949



Mapping Quality

Mapping Quality Histogram
K006238_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006238_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20140014.Bisulfite-Seq.DNA_Methylation.EGAX00001529769.CKD25_C