/EXTERNAL KNIH/mapping_coverage/K006238_1_lane_gembs
BACK
SAMPLE K006238_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1404205858 |
100% |
191077713518 |
100% |
| Mapped |
1386521639 |
98.74 % |
188407396449 |
98.60 % |
| Passed |
648936450 |
46.21 % |
77032032910 |
40.31 % |
| NotPassed |
737585189 |
52.53 % |
111375363539 |
58.29 % |
| |
|
|
|
|
| LowMAPQ |
472121388 |
33.62 % |
71290329588 |
37.31 % |
| MateUnmapped |
17684219 |
1.26 % |
2670317069 |
1.40 % |
| Duplicate |
219338167 |
15.62 % |
33120063217 |
17.33 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
261954 |
0.02 % |
39555054 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
45863680 |
3.27 % |
6925415680 |
3.62 % |
| Unmapped |
17684219 |
1.26 % |
2670317069 |
1.40 % |
Base Level Counts
| Bases |
# |
% |
| Total |
97866431060 |
100% |
| Passed |
72027137441 |
73.60 % |
| Trimmed |
2666871700 |
2.73 % |
| Clipped |
1094465012 |
1.12 % |
| Overlapping |
19739933138 |
20.17 % |
| LowQuality |
2338023769 |
2.39 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |