/EXTERNAL KNIH/methylation/K006238_1_lane_gembs

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SAMPLE K006238_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26792508 22060372 82.34 %
NonRefCpG 386496 188061 48.66 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006238_1_lane_gembs_coverage_refCpG.png ./IMG//K006238_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006238_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K006238_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006238_1_lane_gembs_quality_refcpg.png ./IMG//K006238_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006238_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6830715 13.16 % 5633043 12.18 % 146656 21.12 % 43266 9.63 %
Intermediate (0.3-0.7) 8676158 16.72 % 6747938 14.59 % 151580 21.83 % 79707 17.73 %
Methylated (0.7-1) 36392176 70.12 % 33855589 73.22 % 396088 57.05 % 326476 72.64 %
Median Methylation 0.850 0.860 0.770 0.860