/EXTERNAL KNIH/K006242_1_lane_gembs

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SAMPLE K006242_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1458828910 100.00 % 729414455 100.00 % 729414455 100.00 %
General Reads 1419163602 97.28 % 712811058 97.72 % 706352544 96.84 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 11083609 0.76 % 5579013 0.76 % 5504596 0.75 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 28581699 1.96 % 11024384 1.51 % 17557315 2.41 %
Bisulfite_reads C2T 727076064 49.84 % 365122632 50.06 % 361953432 49.62 %
Bisulfite_reads G2A 703171147 48.20 % 353267439 48.43 % 349903708 47.97 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 381228140
Average Unique 52.26 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 78000170137 35.18 % 30584170416 27.59 % 47415999721 42.77 %
Base Counts Overall C 32017064933 14.44 % 5783243816 5.22 % 26233821117 23.66 %
Base Counts Overall G 34479186615 15.55 % 27170625196 24.51 % 7308561419 6.59 %
Base Counts Overall T 75634209204 34.11 % 46560848270 42.00 % 29073360934 26.22 %
Base Counts Overall N 1611363431 0.73 % 772109462 0.70 % 839253969 0.76 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9647601992881424
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 446116710



Mapping Quality

Mapping Quality Histogram
K006242_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006242_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
KEP20150003.Bisulfite-Seq.DNA_Methylation.EGAX00001529774.IPS03_N