/EXTERNAL KNIH/K006242_1_lane_gembs/KEP20150003.Bisulfite-Seq.DNA_Methylation.EGAX00001529774.IPS03_N

BACK

SAMPLE K006242_1_lane_gembs LANE KEP20150003.Bisulfite-Seq.DNA_Methylation.EGAX00001529774.IPS03_N

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	1458828910	100.00 %	729414455	100.00 %	729414455	100.00 %
General Reads	1419163602	97.28 %	712811058	97.72 %	706352544	96.84 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	11083609	0.76 %	5579013	0.76 %	5504596	0.75 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	28581699	1.96 %	11024384	1.51 %	17557315	2.41 %
Bisulfite_reads C2T	727076064	49.84 %	365122632	50.06 %	361953432	49.62 %
Bisulfite_reads G2A	703171147	48.20 %	353267439	48.43 %	349903708	47.97 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	381228140
Average Unique	52.26 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	78000170137	35.18 %	30584170416	27.59 %	47415999721	42.77 %
Base Counts Overall C	32017064933	14.44 %	5783243816	5.22 %	26233821117	23.66 %
Base Counts Overall G	34479186615	15.55 %	27170625196	24.51 %	7308561419	6.59 %
Base Counts Overall T	75634209204	34.11 %	46560848270	42.00 %	29073360934	26.22 %
Base Counts Overall N	1611363431	0.73 %	772109462	0.70 %	839253969	0.76 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9647601992881424
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	446116710

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
151	729414455
151	729414455

Insert Size Plot

Insert Size Histogram