/EXTERNAL KNIH/mapping_coverage/K006242_1_lane_gembs
BACK
SAMPLE K006242_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1297046088 |
100% |
176204614470 |
100% |
| Mapped |
1282000416 |
98.84 % |
173932717998 |
98.71 % |
| Passed |
503963817 |
38.85 % |
56449191549 |
32.04 % |
| NotPassed |
778036599 |
59.99 % |
117483526449 |
66.67 % |
| |
|
|
|
|
| LowMAPQ |
609869516 |
47.02 % |
92090296916 |
52.26 % |
| MateUnmapped |
15045672 |
1.16 % |
2271896472 |
1.29 % |
| Duplicate |
131985751 |
10.18 % |
19929848401 |
11.31 % |
| BadOrientation |
0 |
0.00 % |
0 |
0.00 % |
| LargeInsertSize |
326604 |
0.03 % |
49317204 |
0.03 % |
| |
|
|
|
|
| NotCorrectlyAligned |
35854728 |
2.76 % |
5414063928 |
3.07 % |
| Unmapped |
15045672 |
1.16 % |
2271896472 |
1.29 % |
Base Level Counts
| Bases |
# |
% |
| Total |
75848318495 |
100% |
| Passed |
53322993837 |
70.30 % |
| Trimmed |
2049771770 |
2.70 % |
| Clipped |
1370469580 |
1.81 % |
| Overlapping |
18028657366 |
23.77 % |
| LowQuality |
1076425942 |
1.42 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |